Publications

Retrouvez dans cette section l'ensemble des articles et rapports scientifiques réalisés par les membres du RAQ ainsi que les thèses et mémoires produits par les diplomés du regroupement.

Articles scientifiques 2015

  • Vincent A.T., Tanaka K.H., Trudel M.V., Frenette M., Derome N., Charette S.J. 2015. Draft genome sequences of two Aeromonas salmonicida subsp. salmonicida isolates harboring plasmids conferring antibiotic resistance. FEMS Microbiology Letters, 362 .
  • Stepien CA, Behrmann-Godel J, Bernatchez L. 2015. Evolutionary Relationships, Population Genetics, and Ecological and Genomic Adaptations of Perch ( Perca ). In: Chapter 2. Pp 7-46. Biology of Perch, P. Couture and G. Pyle, Editors. CRC Press, Boca Raton, Fl.
  • St-Onge P., Sévigny J.-M., Tremblay R. 2015. Tracking larvae with molecular markers reveals evidence of early spawning success in a partially spawning marine bivalve. Oecologia 178 (3): 733-746.
  • Savoie, Arianne, Le François, Nathalie R., Lamarre, Simon, Dupuis, Francis , Hébert-Châtelain, Étienne and Pierre U. Blier. (2015) Physiological adjustments associated to compensatory growth in juvenile brook charr ( Salvelinus fontinalis ): evaluation of seasonal effects. Accepté dans Aquaculture International
  • Pujolar JM, Jacobsen MW, Bekkevold D, Lobón-Cervià J, Jónsson B, Bernatchez L, Hansen MM. 2015 Signatures of selection between life cycle stages separated by metamorphosis in the European eel. BMC Genomics. 16: 600.
  • Pollet T., Cloutier O., Nozais N., McKindsey C.W., Archambault P. 2015. Metabolic Activity and Functional Diversity Changes in Sediment Prokaryotic Communities Organically Enriched with Mussel Biodeposits. PLoS ONE 10(4): e0123681. doi:10.1371/journal.pone.0123681
  • Perrier C, April J, Côté G, Bernatchez L, Dionne M. 2015. Effective number of breeders in relation to census size as management tools for Atlantic salmon conservation in a context of stocked populations. Conservation Genetics. 16: doi:10.​1007/​s10592-015-0758-5
  • Pepin P, Robert D, Bouchard C, Dower JF, Fortier L, Jenkins GP, Leclerc V, Levesque K, Llopiz JK, Meekan MG, Murphy HM, Ringuette M, Sirois P, Sponaugle S (2015) Once upon a larva: Revisiting the relationship between feeding success and growth in fish larvae. ICES J Mar Sci 72:359-373 ( Choix de l’éditeur ICES )
  • Pavey SA, Gaudin J, Normandeau E, Dionne M, Castonguay M, Audet C, Bernatchez L. 2015. RAD Sequencing Highlights Polygenic Discrimination of Habitat Ecotypes in the Panmictic American Eel. Current Biology. 25: 1666–1671.
  • Munro, D., Martel, A. L., & Blier, P. U. (2015). Cold counteracting membrane fatty acid remodeling is not expressed during quiescence in the bivalve mercenaria mercenaria. Journal of Experimental Marine Biology and Ecology, 466 , 76-84. doi:10.1016/j.jembe.2015.02.003
  • Munro, D., & Blier, P. U. (2015). Age, diet, and season do not affect longevity-related differences in peroxidation index between spisula solidissima and arctica islandica. Journals of Gerontology - Series A Biological Sciences and Medical Sciences, 70 (4), 434-443. doi:10.1093/gerona/glu054
  • Moritz C., Gravel D., Savard L., McKindsey C.W., Brêthes J.-C., Archambault P. 2015. No more detectable fishing effect on Northern Gulf of St. Lawrence benthic invertebrates. ICES Journal of Marine Science; doi:10.1093/icesjms/fsv124
  • Morissette O, Lecomte F, Verreault G, Legault M, Sirois P (2015) Fully equipped to succeed: Migratory contingents seen as an intrinsic potential for Striped Bass to exploit a heterogeneous environment early in life. Estuar Coast doi:10.1007/s12237-015-0015-7
  • Mohit V., Archambault P., Lovejoy C. 2015. Resilience and adjustments of surface sediment bacterial communities in an enclosed shallow coastal lagoon, Magdalen Islands, Gulf of St. Lawrence, Canada. FEMS Microbiology Ecology 91. Doi:10.1093/femsec/fiv038
  • Mee JA, Bernatchez L, Reist JD, Rogers SM, Taylor EB. 2015. Identifying designatable units for intraspecific conservation prioritization: a hierarchical approach applied to the lake whitefish species complex (Coregonus spp.). Evolutionary Applications. 8: 423-441.
  • Martineau C., Mauffrey F., Villemur R. 2015. Comparative analysis of denitrifying activity in Hyphomicrobium nitrativorans , Hyphomicrobium denitrificans and Hyphomicrobium zavarzinii . Appl. Environ. Microbiol. 81:5003-5014.
  • Malvezzi A., Murray C., Feldheim K., DiBattista J., Garant D., Gobler C., Chapman D., Baumann H. 2015. A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification. Evolutionary Applications. 8 (4): 352-362.
  • Létourneau L. 2015. L’intégration de l’éthique à la réglementation des OGM », Regards croisés sur le droit contemporain en (r)évolution. Mélanges en l’honneur d’Édith Deleury , Montréal, Éditions Yvon Blais (sous presse).
  • Le Cam S, Perrier C, Bernard AL, Bernatchez L, Evanno G. 2015. Genetic and phenotypic changes in an Atlantic salmon population supplemented with non-local individuals: a longitudinal study over 21 years. Proceedings of the Royal Society B: Biological Sciences. 282: 20142765.
  • Lavoie M.-F., McKindsey C.W., Pearce C.M., Archambault P. 2015. Influence of intertidal Manila clam ( Venerupis phillipinarum ) aquaculture on biogeochemical fluxes. Aquaculture Environment Interactions. (sous presse)
  • Laporte M, Rogers SM, Dion-Côté A-M, Normandeau E, Gagnaire P-A, Dalziel AC, Chebib J, Bernatchez L. 2015. RAD-QTL mapping reveals both genome-level parallelism and different genetic architecture underlying the evolution of body shape in Lake Whitefish (Coregonus clupeaformis) species pairs. G3. 5: 1481-1491
  • Lamarre, S. G., Saulnier, R. J., Blier, P. U., & Driedzic, W. R. (2015). A rapid and convenient method for measuring the fractional rate of protein synthesis in ectothermic animal tissues using a stable isotope tracer. Comparative Biochemistry and Physiology Part - B: Biochemistry and Molecular Biology, 182 , 1-5. doi:10.1016/j.cbpb.2014.11.006
  • Holbach M., Robert R., Boudry P., Petton B., Archambault P., Tremblay R. 2015. Scallop larval survival from erythromycin treated broodstock after conditioning without sediment . Aquaculture 437:312–317.
  • Glaz P, Gagné J-P, Archambault P, Sirois P, Nozais C (2015) Impact of forest harvesting on water quality and fluorescence characteristics of dissolved organic matter in Eastern Canadian Boreal Shield lakes. Biogeosciences Discuss 12:9307-9339
  • Gaillard M., Bernatchez L. Tremblay R., Audet, C. 2015. Regional variation in energy storage strategies in American glass eels from Eastern Canada. Comparative Biochemistry and Physiology, Part A 188:87-95.
  • Freuchet F., Flores A.A.V., Tremblay R. 2015. Interacting environmental stressors modulate reproductive output and larval performance in a tropical intertidal barnacle. Marine Ecology Progress Series 532: 161-175.
  • Emond-Rheault J.G., Vincent A.T., Trudel M.V., Frey J., Frenette M. et Charette S.J. AsaGEI2b : a new variant of a genomic island revealed in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland. FEMS Microbiol letters . In press
  • Emond-Rheault J.G., Vincent A.T., Trudel M.V., Frey J., Frenette M, Charette S.J. 2015. AsaGEI2b: a new variant of a genomic island identified in the Aeromonas salmonicida subsp. salmonicida JF3224 strain isolated from a wild fish in Switzerland. FEMS Microbiol. Lett. :362:fnv093. doi: 10.1093/femsle/fnv093.
  • Emond-Rheault J.G., Vincent A.T., Trudel M.V., Brochu F., Boyle B., Tanaka K.H., Attéré S.A., Jubinville É., Loch T.P., Winters A.D., Faisal M., Frenette M., Derome N., Charette S.J. 2015. Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins. Vet Microbiol. 2015. 175:68-76. doi: 10.1016/j.vetmic.2014.11.014.
  • Emond-Rheault J.G., Vincent A.T., Trudel M.V, Brochu F., Boyle B., Tanaka K.H., Attéré S.A., Jubinville E., Frenette M., Derome N. et Charette S.J. 2015. Various versions of a genomic island in Aeromonas salmonicida subsp. salmonicida reveal their link with geographical distribution of the bacterium. Vet Microbiol, 175:68-76 .
  • Dufresne, F., Barroux, A., DitleCadet, D., & Blier, P. U. (2015). Quantitative variation for metabolic traits among brook trout populations inhabiting different environments. Journal of Zoology . (sous presse).
  • Drouin A., Archambault P., Clynick B., Richer K., McKindsey C.W. 2015. Influence of mussel aquaculture on the distribution of vagile benthic macrofauna in îles de la Madeleine, eastern Canada ). Aquaculture Environment Interactions. 6:175–183, 2015.
  • Dion-Côté A-M, Symonová R, Ráb P, Bernatchez L. 2015. Reproductive isolation in a nascent species pair is associated with aneuploidy in hybrid offspring. Proceedings of the Royal Society B: Biological Sciences. 282: 20142862.
  • Deschenes J.-S., Boudreau A., Tremblay R. 2015. Mixotrophic Production of microalgae in pilot-scale photobioreactors: Practicability and process considerations. Algal Research 10: 80-86.
  • Deschênes J-S., Boudreau A. et Tremblay R. 2015. Mixotrophic production of microalgae in pilot-scale photobioreactors: Practicability and process considerations, Algal Res. , 10, 80-86.
  • Deschênes J-S. et Vande Wouwer A. 2015. Dynamic Optimization of Biomass Productivity in Continuous Cultures of Microalgae Isochrysis galbana through Modulation of the Light Intensity, in Proc. ADCHEM 2015 Conference , Whilster, Canada, 7-10 June 2015, 1094-1100.
  • Defo M, Bernatchez L, Campbell PGC, Couture P. 2015. Transcriptional and biochemical markers in transplanted Perca flavescens to characterize cadmium- and copper-induced oxidative stress in the field. Aquatic Toxicology. 162: 39-53.
  • Dalziel AC, Martin N, Laporte M, Guderley H, Bernatchez L. 2015. Acclimation and adaptation of aerobic exercise physiology in Lake Whitefish ecotype ( Coregonus clupeaformis ). Evolution. 69: 2167-2186.
  • Côté CL, Pavey SA, Stacey JA, Pratt TC, Castonguay M, Audet C, Bernatchez L. 2015. Growth, female bimodality and sex ratio variability in American Eel ( Anguilla rostrata ) of different origins in both controlled conditions and the wild: Implications for stocking programs. Transactions of the American Fisheries Society. 44: 246-257.
  • Bradbury IR, Hamilton LC, Rafferty S, Meerburg D, Poole R, Dempson JB, Robertson MJ, Reddin DG, Bourret V, Dionne M, Chaput G, Sheehan TF, King TL, Bernatchez L. 2015. Genetic evidence of local exploitation of Atlantic salmon in a coastal subsistence fishery in the Northwest Atlantic. Canadian Journal of Fisheries and Aquatic Sciences. 72: 83-95.
  • Bradbury I, Hamilton L, Dempson J, Robertson M, Bourret V, Bernatchez L, Verspoor E. 2015. Transatlantic secondary contact in Atlantic salmon, comparing microsatellites, a SNP array, and Restriction Associated DNA sequencing for the resolution. Molecular Ecology. DOI: 10.1111/mec.13395
  • Boivin B, Castonguay M, Audet C, Pavey S, Dionne M, Bernatchez L. 2015. How does salinity influence habitat selection and growth in juvenile American eels Anguilla rostrata ? Journal of Fish Biology. 86 : 765-784.
  • Benestan L, Gosselin T, Perrier C, Rochette R, Bernatchez L. 2015. RAD-genotyping reveals fine-scale genetic structuring and provides powerful population assignment in a widely distributed marine species. Molecular Ecology. 24: 3299–3315.
  • Benchetrit J, Béguer-Pon M, Sirois P, Castonguay M, Fitzsimons JD, Dodson JJ (2015) Using otolith microchemistry to reconstruct habitat use of American Eels Anguilla rostrata in the St. Lawrence River-Lake Ontario system. Ecol Fresh Fish doi:10.1111/eff.12246
  • Bassim S., Chapman W.R., Tanguy A., Moraga D., Tremblay R. 2015. Predicting growth and mortality of bivalve larvae using gene expression and supervised machine learning. Comparative Biochemistry and Physiology Part D: Genomics and Proteomics 16: 59-72.
  • Baillon L, Pierron F, Coudret R, Normandeau E, Caron A, Peluhet L, Labadie P, Budzinski H, Durrieu G, Sarraco J, Elie, Couture P, Baudrimont M, Bernatchez L. 2015. Transcriptome profile analysis reveals specific signatures of pollutants in Atlantic eels. Ecotoxicology. 24: 71-84.
  • Baillon L, Oses J, Pierron F, du Colombier SB, Caron A, Normandeau E, Lambert P, Couture P, Labadie P, Budzinski H, Dufour S, Bernatchez L, Baudrimont M. 2015. Gonadal transcriptome analysis of wild contaminated female European eels during artificial gonad maturation. Chemosphere. 139:303-309.
  • Azizishirazi A, Dew W, Bougas B, Bernatchez L, Pyle G. 2015. Dietary sodium protects fish against copper-induced olfactory impairment. Aquatic Toxicology. 161: 1-9.
  • Arnold A.A., Genard B., Zito F., Tremblay R., Warschawski D.W., Marcotte I. 2015. Identification of lipids and saccharides constituents of whole microalgal cells by 13C solid-state NMR. BBA-Biomembranes 1848: 369-377.
  • 89. Gaillard, M. , L. Bernatchez, R. Tremblay et C. Audet. 2015. Regional variation in energy storage strategies in American glass eels from Eastern Canada. Comparative Biochemistry & Physiology, Part A. 188: 87-95. dx.doi.org/10.1016/j.cbpa.2015.06.019
  • 88. Pavey, S.A. , J. Gaudin, É. Normandeau, M. Dionne, M. Castonguay, C. Audet, L. Bernatchez. 2015. RAD sequencing highlights polygenic discrimination of habitat ecotypes in the panmictic American eel. Current Biology 25: 1-6. dx.doi.org/10.1016/j.cub.2015.04.062
  • 87. Ait Youcef, W ., Y. Lambert et C. Audet. 2015. Variations in length and growth of Greenland halibut juveniles in relation to environmental conditions. Fisheries Research 167: 38-47. dx.doi.org/10.1016/j.fishres.2015.01.007
  • 86. Boivin, B. , M. Castonguay, C. Audet, S. Pavey , M. Dionne et L. Bernatchez. 2015. How does salinity influence habitat selection and growth in juvenile American eels Anguilla rostrata ? Journal of Fish Biology 86: 765-784. doi:10.1111/jfb.12604
  • 85. Côté C., S.A. Pavey , J.A. Stacey, T.C. Pratt, M. Castonguay, C. Audet et L. Bernatchez. 2015. Growth, female bimodality and sex ratio variability in American Eel ( Anguilla rostrata ) of different origins in both controlled conditions and the wild: Implications for stocking programs. Transactions of the American Fisheries Society 144: 246-257. DOI: 10.1080/00028487.2014.975841