Publications

Retrouvez dans cette section l'ensemble des articles et rapports scientifiques réalisés par les membres du RAQ ainsi que les thèses et mémoires produits par les diplomés du regroupement.

Articles scientifiques 2013

  • Ziwei B, Pilote A, Sarker PK, Vandenberg GW, Pawliszyn J. 2013 Determination of geosmin using in-vivo solid phase microextraction technique. Analytical Chemistry, 85(4):2328-32.
  • Yossa R, Sarker PK, Vandenberg GW. 2013 The effect of the dietary biotin on zebrafish Danio rerio reproduction. Aquaculture Research. doi: 10.1111/are.12166.
  • Yossa R, Sarker PK, Proulx E, Saxena V, Ekker M, Vandenberg G. 2013. A practical approach for sexing zebrafish Danio rerio (Hamilton). Journal of Applied Aquaculture, 25(2): 148-153.
  • Yossa R, Sarker PK, Mock DM, Vandenberg GW. 2013. Dietary biotin requirement for growth of juvenile zebrafish Danio rerio (Hamilton-Buchanan). Aquaculture Research, 1–11 doi:10.1111/are.12124.
  • Wahle RA, Battison A, Bernatchez L, Boudreau S, Castro K, Grabowski JH, Greenwood SJ, Guenther C, Rochette R, J Wilson. 2013. The American Lobster in a Changing Ecosystem: A US–Canada Science Symposium, 27–30 November 2012, Portland, Maine. Canadian Journal of Fisheries and Aquatic Sciences, 70: 1571–1575.
  • Villeneuve C, Martineau C, Mauffrey F, Villemur R. 2013. Methylophaga nitratireducens sp. nov. and Methylophaga frappieri sp. nov. isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome (Canada). International Journal of Systematic and Evolutionary Microbiology, 63: 2216-2222.
  • Vagner M, de Montgolfier B, Sévigny JM, Tremblay R, Audet C. 2013. Expression of genes involved in key metabolic processes during winter flounder ( Pseudopleuronectes americanus ) metamorphosis. Canadian Journal of Zoology, 91: 156-163.
  • Trudel M, Tanaka KH, Filion G, Daher RK, Frenette M, Charette SJ . 2013. Insertion sequence AS 5 (ISAS 5 ) is involved in the genomic plasticity of Aeromonas salmonicida . Mobile Genetic Elements, 3 ;3 : e25204-6 et page couverture .
  • Tardy-Laporte C, Arnold AA, Génard B, Gastineau R, Morançais M, Mouget JL, Tremblay R, Marcotte I. 2013. A 2H solid-state NMR study of effect of antimicrobials on intact Escherichia coli without mutating. Biochimica and Biophysica Acta, 1828: 614–622.
  • Tanaka KH, Frenette M, Charette SJ. 2013. IS-mediated loss of virulence by Aeromonas salmonicida: A tangible piece of an evolutionary puzzle. Mobile Genetic Elements. 3(1):e23498.
  • Taborsky B, Tschirren L, Meunier C, Aubin-Horth N. 2013. Stable reprogramming of brain transcription profiles by the early social environment in a cooperatively breeding fish. Proceedings of the Royal Society B: Biological Sciences, 280 (1753).
  • St-Onge P, Sévigny JM, Strasser C, Tremblay R. 2013. Strong population differentiation of softshell clams ( Mya arenaria ) sampled across seven biogeographic marine ecoregions: possible selection and isolation by distance. Marine Biology, 160:1065–1081.
  • Smith S, Bernatchez L, Beheregaray LB. 2013. RNA-seq analysis reveals extensive transcriptional plasticity to temperature stress in a freshwater fish species. BMC Genomics, 14: 375.
  • Seychelles LH, Doiron K, Audet C, Tremblay R, Pernet F, Lemarchand K. 2013. Impact of arachidonic acid enrichment of live rotifer prey on bacterial communities in rotifer and larval fish cultures. Canadian Journal of Microbiology, 59(3):189-196.
  • Rose A, Bernatchez L, Bonin A, Buerkle CA, Carstens B, Emerson B, Garant D, Giraud T, Kane N, Rogers S, Slate J, Smith H, Sork V, Stone G, Waits L, Widmer A, Rieseberg L. 2013. A Roadmap for Molecular Ecology. Molecular Ecology, 22: 2605–2626.
  • Robert P, McKindsey CW, Chaillou G, Archambault P. 2013. Dose-dependent response of a benthic system to biodeposition from suspended blue mussel ( M edulis ) culture. Marine Pollution Bulletin, 66:92–104.
  • Piot A, Nozais C, Archambault P. 2013. Meiofauna affect the macrobenthic biodiversity-ecosystem functioning relationship. OIKOS, 123:203–213.
  • Perrier C, Bourret V, Kent M, Bernatchez L. 2013. Parallel and non-parallel genome-wide divergence among replicate population pairs of freshwater and anadromous Atlantic salmon. Molecular Ecology, 22: 5577-5593.
  • Perez V, Olivier F, Tremblay R, Neumeier U, Thébault J, Chauvaud L, Meziane T. 2013. Trophic resources of the bivalve, Venus verrucosa , in the Chausey archipelago (Normandy, France) determined by stable isotopes and fatty acids. Aquatic Living Ressources, 26(3): 229-239.
  • Pavey SA, Sevellec M, Adam W, Normandeau E, Lamaze FC, Gagnaire P-A, Filteau M, Gagnon-Hébert F-O, Maaroufi H, Bernatchez L. 2013. Nonparallelism in MHC IIβ diversity accompanies nonparallelism in pathogen infection of lake whitefish ( Coregonus clupeaformis ) species pairs as revealed by next-generation sequencing. Molecular Ecology, 22:3833–3849.
  • Ouellet P, Bui AOV, Lavoie D, Chassé J, Lambert N, Ménard N, Sirois P. 2013. Seasonal distribution, abundance, and growth of larval capelin ( Mallotus villosus ) and the role of the Lower Estuary (Gulf of St. Lawrence, Canada) as a nursery area. Canadian Journal of Fisheries and Aquatic Sciences, 70:1508–1530.
  • Neville H, Bernatchez L. 2013. Coding gene single nucleotide polymorphism population genetics of nonnative brook trout: the ghost of introductions past. Transactions of the American Fisheries Society, 142: 1215-1231.
  • Moritz C, Lévesque M, Gravel G, Vaz S, Archambault D, Archambault P. 2013. Predicting habitat suitability of epibenthic communities in the Gulf of St. Lawrence (Canada). Journal of Sea Research, 78:75-84.
  • Milot E, Perrier C, Papillon L, Dodson JJ, Bernatchez L. 2013. Reduced fitness of Atlantic salmon released in the wild after one generation of captive-breeding. Evolutionary Applications, 6: 472-485.
  • Martineau C, Villeneuve C, Mauffrey F, Villemur R. 2013. Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome (Canada). International Journal of Systematic and Evolutionary Microbiology, 63: 3777-3781.
  • Marcoux JM, Cardenas Gomez OC, Létourneau L. 2013. The Inclusion of Non-safety Criteria within the Regulatory Framework of Agricultural Biotechnology: Exploring Factors That Are Likely to Influence Policy Transfer. Review for Policy Research, 30(6):657-684.
  • Lord F, Létourneau L. 2013. Éthique et risques dans la réglementation des biotechnologies : la prise en compte des questions normatives dans les processus d’homologation contemporains. Revue canadienne Droit et société, 28:247-265.
  • Létourneau L, Cardenas Gomez OC, Richard V. 2013. Novel Food Policy: Coming to Terms with Lay Conceptions of Risk and the Social Acceptability of Risk. Food Studies: An Interdisciplinary Journal, 2:15-29.
  • Lamaze FC, Garant D, Bernatchez L. 2013. Stocking impacts the expression of candidate genes and physiological condition in introgressed brook charr ( Salvelinus fontinalis ) populations. Evolutionary Applications, 6 (2): 393-407.
  • Kumer Sarker P, Vandenberg GW, Bureau DP, Hua K, Drew MD, Forster I, Hicks B. 2013. Sustainability issues related to feeding salmonids: a Canadian perspective. Reviews in Aquaculture. doi: 10.1111/raq.12013.
  • Hennebicq R, Fabra G, Pellerin C, Marcotte I, Myrand B, Tremblay R. 2013. The effect of cultured mussels (Mytilus edulis) spawning on mechanical properties, chemical and biochemical composition of byssal threads. Aquaculture, 410-411:11-17.
  • Girard JM, Deschênes JS, Tremblay R, Gagnon, J. 2013. FT-IR/ATR Univariate and multivariate calibration models for in situ monitoring of sugars in complex microalgal culture media. Bioresource Technology, 144: 664-668.
  • Gendron L, Tremblay R, Belvin S, Genard B, Motnikar S, Côté J. 2013. Condition, survival and growth in situ of hatchery-reared stage IV lobster ( Homarus americanus ) fed Artemia and lipid-rich wild zooplankton. Aquaculture, 416–417 (2013) 380–389.
  • Genard B, Miner P, Nicolas JL, Moraga D, Boudry P, Pernet F, Tremblay R. 2013. Integrative study of physiological changes associated with bacterial infection in Pacific oyster larvae. PLOS ONE, 8(5): e64534.
  • Gagnon V, Chazarenc F, Comeau Y, Brisson J. 2013. Effect of plant species on sludge dewatering and fate of pollutants in sludge treatment wetlands. Ecological Engineering, 61B, 593-600.
  • Dupont-Prinet, A., M. Vagner, D. Chabot et C. Audet. 2013. Impact of hypoxia on the metabolism of Greenland halibut ( Reinhardtius hippoglossoides ). Canadian Journal of Fisheries and Aquatic Sciences, 70: 461–469. dx.doi.org/10.1139/cjfas-2012-0327 .
  • Dupont-Prinet A, Pillet M, Chabot D, Hansen T, Tremblay R, Audet C. 2013. Northern shrimp ( Pandalus borealis ) oxygen consumption and metabolic enzyme activities are severely constrained by hypoxia in the Estuary and Gulf of St. Lawrence. Journal of Experimental Marine Biology and Ecology, 448:298-307.
  • Dodson JJ, Sirois P, Daigle G, Gaudin P, Bardonnet A. 2013. Otolith microstructure during the early life-history stages of Brown trout ( Salmo trutta ): validation and interpretation. North American Journal of Fisheries Management, 33:108-116.
  • Dodson JJ, Aubin-Horth N, Thériault V, Páez DJ. 2013. The evolutionary ecology of alternative migratory tactics in salmonid fishes. Biological Reviews, 88 (3): 602-625.
  • Dallaire-Dufresne S, Barbeau X, Sarty D, Tanaka KH, Denoncourt AM, Lague P, Reith M, and Charette SJ. 2013. Aeromonas salmonicida Ati2 is an effector protein of the type three secretion system, which has an inositol polyphosphate 5-phosphatase activity required for host cell toxicity. Microbiology, 159:1937-45.
  • Crespel A, Bernatchez L, Garant D, Audet C. 2013. Genetically based population divergence in overwintering energy mobilization in brook charr ( Salvelinus fontinalis ). Genetica, 141 (1-3): 51-64.
  • Crespel A, Bernatchez L, Audet C, Garant D. 2013. Strain-specific gene-environment interactions and evolutionary potential for body mass in brook charr ( Salvelinus fontinalis ). G3: Genes, Genomes, Genetics, 3 (3): 379-386.
  • Couturier CS, Andersen NG, Audet C, Chabot D. 2013. Prey exoskeletons influence the course of gastric evacuation in Atlantic cod Gadus morhua L.? Journal of Fish Biology, 82: 789-805.
  • Claveau-Mallet D, Wallace S, Comeau Y. 2013. Removal of phosphorus, fluoride and metals from a gypsum mining leachate using steel slag filters. Water Research, 47(4): 1512-1520.
  • Boutin S, Bernatchez L, Audet C, Derome N. 2013. Network analysis highlights complex interactions between pathogen, host and commensal microbiota. PloS ONE, 8 (12): e84772. doi:10.1371/journal.pone.0084772
  • Boutin S, Audet C, Derome N. 2013. Probiotic treatment by indigenous bacteria decreased mortality without disturbing the natural microbiota of Salvelinus fontinalis. Canadian Journal of Microbiology, 59: 662–670. dx.doi.org/10.1139/cjm-2013-0443
  • Bourret V, Kent MP, Primmer CR, Vasemagi A, Karlsson S, Hindar K, McGinnity P, Verspoor E, Bernatchez L, Lien S. 2013. SNP-array reveals genome wide patterns of geographical and potential adaptive divergence across the natural range of Atlantic salmon ( Salmo salar ). Molecular Ecology, 22: 532-551.
  • Bourret V, Dionne M, Kent MP, Lien S, Bernatchez L. 2013. Landscape Genomics in Atlantic Salmon ( Salmo salar ): searching for gene-environment interactions driving local adaptation. Evolution, 67: 3469-3487.
  • Bougas B, Normandeau E, Audet C, Bernatchez L. 2013. Linking transcriptomic and genomic variation to growth in brook charr hybrids ( Salvelinus fontinalis , Mitchill). Heredity, 110: 492-500. doi:10.1038/hdy.2012.117.
  • Bougas B, Audet C, Bernatchez L. 2013. The influence of parental effects on transcriptomic landscape during early development in brook charr ( Salvelinus fontinalis , Mitchill). Heredity, 110: 484-491. doi:10.1038/hdy.2012.113.
  • Auffret M, Yergeau E, Pilote A, Proulx E, Proulx D, Greer C, Vandenberg G, Villemur R. 2013. Impact of water quality on the bacterial populations and off-flavour in recirculating aquaculture systems. FEMS Microbiology Ecology, 84(2): 235-247.
  • Arnold AA, F Byette, Séguin-Heine M-O, LeBlanc A, Sleno L, Tremblay R, Pellerin C, Marcotte I. 2013. Solid-state NMR structure determination of whole anchoring threads from the blue mussel Mytilus edulis. Biomacromolecules, 14: 132-141.
  • Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Riesberg LH. 2013. A Roadmap for Molecular Ecology. Molecular Ecology, 22 (10): 2605-2626.
  • Ait Youcef W, Lambert Y, Audet C. 2013. Spatial distribution of Greenland halibut Reinhardtius hippoglossoides in relation to abundance and hypoxia in the Estuary and Gulf of St. Lawrence. Fisheries Oceanography, 22: 41-60. doi:10.1111/fog.12004