Publications

Retrouvez dans cette section l'ensemble des articles et rapports scientifiques réalisés par les membres du RAQ ainsi que les thèses et mémoires produits par les diplomés du regroupement.

Articles scientifiques 2014

  • Yossa R, Sarker PK, Mock DM, Lall S, Vandenberg GW. 2014. Current knowledge on biotin nutrition in fish and research perspectives. doi: 10.1111/raq.12053.
  • Vincent AT, Trudel MV, Paquet VE, Boyle B, Tanaka KH, Dallaire-Dufresne S, Daher RK, Frenette M, Derome N and Charette SJ. 2014. Detection of multidrug-resistant plasmid variants of pRAS3, pAb5S9 and pSN254 in Aeromonas salmonicida subsp. salmonicida : interspecies exchanges and plasmid reshaping . Antimicrob. Agents Chemother. 58:7367-74.
  • Vincent AT, Boyle B, Derome N et Charette SJ. 2014. Improvement in the DNA sequencing of genomes bearing long repeated elements. J. Microbiol. Methods, 107:186-8 .
  • Valiquette E, Perrier C, Thibault I, Bernatchez L. 2014. Loss of genetic integrity in wild lake trout populations following stocking: Insights from an exhaustive study of 72 lakes from Québec, Canada. Evolutionary Applications. 7: 625-644.
  • Vagner M, de Montgolfier B, Sévigny JM, Tremblay R and Audet C. 2014. Effects of algae-enriched rotifers on winter flounder ( Pseudopleuronectes americanus ) gene expression during metamorphosis. Marine Biology 161 (5): 985–999. DOI 10.1007/s00227-013-2381-7.
  • Ulrik MG, Pujolar JM, Ferchaud AL, Jacobsen MW, Als TD, Gagnaire PA, Frydenberg J, Bøcher PK, Jónsson B, Bernatchez L, Hansen MM. 2014. Do North Atlantic Eels show parallel patterns of spatially varying selection? BMC Evolutionary Biology. 14 : 138
  • Tremblay I, Samson-Dô M and Guderley HE. 2015. When behavior and mechanics meet: scallop swimming capacities and their ligament. Journal of Shellfish Research 43: In press.
  • Tremblay I and Guderley HE. 2014. Scallops show that muscle metabolic capacities reflect locomotor style and morphology. Physiological and Biochemical Zoology 87:231-244.
  • Torterotot J-B, Perrier C, Bergeron NE, Bernatchez L. 2014. Influence of forest road culverts and waterfalls on the fine scale distribution of brook trout genetic diversity in a boreal watershed. Transactions of the American Fisheries Society. 143 (6):1577-1591.
  • Tamdrari H, Brêthes J-C, Archambault D . 2014. Spatio-temporal variations in demersal fish assemblages and diversity in the northern Gulf of St. Lawrence (Canada). Marine Ecology doi: 10.1111/maec.12163
  • Sevellec M, Pavey S, Boutin S, Filteau M, Adam W, Derome N, Bernatchez L. 2014. Microbiome investigation in the ecological speciation context of lake whitefish ( Coregonus clupeaformis ) using next-generation sequencing. Journal of Evolutionary Biology. 27 : 1029–1046.
  • Seguin-Heine M-O, Lachance A-A, Genard B, Myrand B, Pellerin C, Marcotte I, Tremblay R. 2014. Impact of open-sea culture habitat on byssus attachment of suspended blue mussels ( Mytilus edulis ). Aquaculture 426-427: 189-196.
  • Sarker P, Pilote A, Auffret M, Proulx E, Villemur R, Deschamps M-H, Vandenberg G. 2014. Reducing geosmin off-flavor compounds and waste outputs through dietary phosphorus management in rainbow trout aquaculture. Aquaculture Environment Interactions. 6: 105-117.
  • Richard A, Bernatchez L, Valiquette E, Dionne M. 2014. Telemetry reveals how catch and release affects prespawning migration in Atlantic salmon ( Salmo salar L.). Canadian Journal of Fisheries and Aquatic Sciences. 71: 1730-1739.
  • Pujolar JM, Jacobsen MW, Als TD, Frydenberg J, Munch K, Jónsson B, Jiang X, Cheng L, Maes GE, Bernatchez L, Hansen MM. 2014. Genome-wide single-generation signatures of local selection in the panmictic European eel. Molecular Ecology. 23: 2514–2528
  • Pujolar JM, Jacobsen MW, Als TD, Frydenberg J, Magnussen E, Bekkevold D, Maes G, Bernatchez L, Hansen MM. 2014.Assessing patterns of hybridization between North Atlantic Eels using diagnostic single nucleotide polymorphisms. Heredity . 112: 627–637
  • Puigagut J, Chazarenc F, Comeau Y. 2014. Influence of tubificid worms on nutrient dynamics across water-sediment interface in fish farm settling ponds. Knowledge and Management of Aquatic Ecosystems, 413, 12 pp. DOI 10.1051/kmae/2014010.
  • Poirier Stewart N, Deschamps M-H, Witten PE, Le Luyer J, Proulx E, Huysseune A, Bureau DP, Vandenberg GW. 2014. X‐ray‐based morphometrics: an approach to diagnose vertebral abnormalities in under‐mineralized vertebrae of juvenile triploid all‐female rainbow trout ( Oncorhynchus mykiss ) fed with a phosphorus deficient diet. Journal of Applied Ichthyology, 30(4), 796-803.
  • Pigeon L-E et Létourneau. 2014. The Leading Canadian NGOs’ Discourse on Fish Farming: From Ecocentric Intuitions to Biocentric Solutions , 27(5) Journal of Agricultural and Environmental Ethics 767-785.
  • Picard R, Myrand B, Tremblay R. 2014. Effect of emersion on soft-shell clam, Mya arenaria and the mussel , Mytilus edulis seeds in relation to development of vitality indices. Aquatic Living ressources 27(2): 91-98.
  • Perrin G, Plourde S, DiBacco C, Winkler G, Sirois P. 2014. Tracing the origins of Calanus sp. in the Saguenay-St. Lawrence Marine Park (Québec, Canada) using δ 13 C as a marker. Mar Ecol Prog Ser 499:89-102.
  • Perrier C, Normandeau E, Dionne M, Richard A, Bernatchez L. Alternative reproductive tactics increase effective population size and decrease inbreeding in wild Atlantic salmon. Evolutionary Applications. 7: 1094-1106.
  • Ouellet-Cauchon G, Normandeau E, Mingelbier M, Bernatchez L. 2014. EST-based microsatellites for northern pike ( Esox lucius ) and cross-amplification across all Esox species. Conservation Genetics Resources 6: 451-454.
  • Ouellet-Cauchon G, Mingelbier M, Lecomte F, Bernatchez L. 2014. Landscape variability explains spatial pattern of population structure of northern pike ( Esox lucius ) in a large fluvial system. Ecology and Evolution. 4: 3723-3735.
  • Morris M.R.J., Richard R., Leder E.H., Barrett R.D.H., Aubin-Horth N, Rogers S.M. 2014. Gene expression plasticity evolves in response to colonization of freshwater lakes in threespine stickleback. Molecular Ecology 23: 3226–3240
  • Moore J-S, Bourret V, Dionne M, Bradbury I, O’Reilly P, Kent M, Chaput G, Bernatchez L. 2014 Conservation genomics of anadromous Atlantic salmon across its North American range: outlier loci identify the same patterns of population structure as neutral loci. Molecular Ecology. 23: 5680-5697.
  • Mohit V, Archambault P, Toupoint N, Lovejoy C. 2014. Attached and free-living bacteria in a temperate lagoon, Magdalen Islands, Gulf of St Lawrence revealed via high throughput 16S rRNA gene sequencing. Applied and Environmental Microbiology 80(7):2071. DOI: 10.1128/AEM.02916-13.
  • Mejri S, Audet C, Vandenberg GW, Parrish CC and Tremblay R. 2014. Biochemical egg quality in a captive walleye ( Sander vitreus ) broodstock population relative to ovulation timing following hormonal treatment. Aquaculture 431: 99-105. dx.doi.org/10.1016/j.aquaculture.2014.03.022.
  • Meier K, Hansen MM, Normandeau É, Mensberg K-L, Frydenberg J, Larsen P, Bekkevold D, Bernatchez L. 2014. Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms. PlosOne. 9: e85171
  • Martineau C, Villeneuve C, Mauffrey F, Villemur R. 2014. Complete genome sequence of Hyphomicrobium nitrativorans strain NL23, a denitrifying bacterium isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome. Genome announcement. 2: e01165-13.
  • Martin N, Kraffe E, Le Grand F, Marty Y, Bureau DP and Guderley H. 2015. Dietary fatty acid composition and the homeostatic regulation of mitochondrial phospholipid classes in Red Muscle of Rainbow trout ( Oncorhynchus mykiss ). Journal of Experimental Zoology 323A:60-71.
  • Martel AL, Tremblay R, Myrand B, Toupoint N, Olivier F. 2014. Veliger size at settlement and metamorphosis and temporal variability in prodissoconch II morphometry in Mytilus edulis from Magdalen Islands, Gulf of St. Lawrence, Québec. Journal of Shellfish Research 33 (2): 443–455.
  • Marcoux J-M et Létourneau L. 2014. Examining the Canadian Government’s Resistance to Including Socioeconomic Concerns in Genetically Modified Seeds Regulation: A Policy Transfer and Multilevel Approach, 31(2) Review of Policy Research 105-124.
  • Marcotte I et Booth V. 2014. 2 H solid-state NMR study of peptide-membrane interactions in intact bacteria, in Advances in Biological Solid-State NMR: Proteins and Membrane-Active Peptides, F Separovic and A Naito (Eds.), In "New Developments in NMR" series Ed. by WS Price, Royal Society of Chemistry. ISBN: 978-1-84973-910-8.
  • Low-Décarie E , Fussmann GF & Bell G. 2014. Aquatic primary production in a high-CO2 world. Trends in Ecology & Evolution 29, 223-232.
  • Llewellyn M, Boutin S, Hoseinifar SH et Derome N. 2014. Teleost microbiomes: progress towards their characterisation, manipulation and applications in aquaculture and fisheries. Frontiers in Microbiology 5:207. [CRSNG-découverte ND].
  • Limberger R , Low-Décarie E & Fussmann GF. 2014. Final thermal conditions override the effects of temperature history and habitat connectivity in experimental communities. Proceedings of the Royal Society B 281, 220141540.
  • Le Luyer J, Deschamps M-H, Proulx E, Poirier Stewart N, Robert C, Vandenberg G. 2014. Responses of differing body compartments to acute P-deficiency in triploid juvenile rainbow trout ( Oncorhynchus mykiss , Walbaum). J. Appl. Ichthyol. 30(4), 825-832.
  • Le Grand F., Soudant P., Siah A., Tremblay R., Marty Y., Kraffe E. 2014. Disseminated neoplasia in the soft-shell clam Mya arenaria : membrane lipid composition and functional parameters of circulating cells. Lipids 49(8):807-818.
  • Lazartigues AV, Sirois P, Savard D. 2014. LA-ICP-MS analysis of small samples: carbonate reference materials and larval fish otoliths. Geostand Geoanal Res 38:225-240.
  • Landry C et Aubin-Horth N. 2014. Recent Advances in Ecological Genomics: From Phenotypic Plasticity
 to Convergent and Adaptive 
Evolution and Speciation, in Landry C. et Aubin-Horth N. (eds.), Ecological Genomics: Ecology and the Evolution 
of Genes and Genomes, Advances in Experimental Medicine and Biology 781,
 DOI 10.1007/978-94-007-7347-9
  • Lamaze FC, Pavey SA, Normandeau E, Roy G, Garant D et Bernatchez L. 2014. Neutral and selective processes shape MHC gene diversity and expression in stocked brook charr populations ( Salvelinus fontinalis ). Molecular Ecology . 23 (7): 1730-1748.
  • Lacasse J et Aubin-Horth N. 2014. Population-dependent conflict between individual sociability and aggressiveness. Animal Behaviour 87: 53-57
  • Kake-Guena SA, Touisse K, Vergilino R, Dufresne F, Blier PU & Lemieux H. 2014. Assessment of mitochondrial functions in daphnia pulex clones using high-resolution respirometry. Journal of Experimental Zoology Part A: Ecological Genetics and Physiology, 323 (5), 292-300. doi:10.1002/jez.1913.
  • Jacobsen MW, Pujolar JM, Bernatchez L, Munch K, Jian J, Niu Y, Hansen MM. 2014. Genomic footprints of speciation in Atlantic eels ( Anguilla anguilla and A. rostrata ). Molecular Ecology. 23: 4785-4798.
  • Jacobsen M, Pujolar JM, Gilbert T, Moreno-Mayar JV, Bernatchez L, Als T, Lobon-Cervia J, Hansen MM. 2014. Speciation and demographic history of Atlantic eels ( Anguilla anguilla and A. rostrata ) revealed by mitogenome sequencing. Heredity. 113: 432-442.
  • Huffman LS, Hinz FI, Wojcik S, Aubin-Horth N, Hofmann HA. 2014. Arginine Vasotocin Regulates Social Ascent in the African Cichlid Fish Astatotilapia burtoni. General and Comparative Endocrinology. Available online 21 March 2014
  • Houde M, Maeva G, Douville M, Bougas B, Couture P, DeSilva AO, Spencer C, Lair S, Bernatchez L, Gagnon C. 2014. A multi-level biological approach to evaluate impacts of a major municipal effluent in wild St. Lawrence River yellow perch ( Perca flavescens ). Science of the Total Environment. 497–498: 307-318.
  • Hébert FO et Aubin-Horth N. 2014. Ecological Genomics of Host Behavior Manipulation by Parasites, in C. Landry and N. Aubin-Horth (eds.), Ecological Genomics: Ecology and the Evolution
 of Genes and Genomes, Advances in Experimental Medicine and Biology 781,
 DOI 10.1007/978-94-007-7347-9
  • Hairston NG Jr & Fussmann GF. 2014. Lake Ecosystems. In: Encyclopaedia of Life Sciences (eLS), John Wiley & Sons Ltd, Chichester. www.els.net.
  • Guderley HE and Tremblay I. 2015. Swimming in Scallops. in Scallops: Biology, Ecology and Aquaculture, edited by S. E. Shumway and J. Parsons. third edition, Elsevier, in press
  • Guderley H, Himmelman JH, Nadeau M, Pérez Cortes HM, Tremblay I and Janssoone X. 2015. Effect of different predators on the escape response of Placopecten magellanicus . Marine Biology 162:1407-1415.
  • Grasset J, Bougas B, Campbell PGC, Bernatchez L. 2014. Temperature, oxygen and diet modulate gene transcription and metabolic capacities in yellow perch. Canadian Journal of Fisheries and Aquatic Sciences. 71: 1635-1641.
  • Glaz P, Sirois P, Archambault P, Nozais C. 2014. Impact of forest harvesting on trophic structure of Eastern Canadian Boreal Shield lakes: Insights from stable isotope analyses. PLoS ONE 9(4):e96143.
  • Girard J-M, Roy M-L, Ben Hafsa M, Gagnon J, Faucheux N, Heitz M, Tremblay R, Deschênes J-S. 2014. Mixotrophic cultivation of green microalgae Scenedesmus obliquu s on cheese whey permeate for biodiesel production. Algal Research 5:241-248.
  • Genard B, Larouche O, Nicolas J-L, Miner P, Beaudin M-L, Tremblay R. 2014. Effect of the probiotic strain Phaeobacter gallaeciensis (X34) after bacterial challenge on the complete larval development of Pecten maximus . Aquatic Living Ressources 27: 27–34.
  • Gastineau R, Turcotte F, Pouvreau J-B, Morançais M, Fleurence J, Windarto E, Prasetiya FS, Arsad S, Jaouen P, Babin M, Coiffard L, Couteau C, Bardeau J-F, Jacquette B, Leignel V, Hardivillier Y, Marcotte I, Bourgougnon N, Tremblay R, Deschênes J-S, Badawy H, Pasetto P, Davidovich N, Hansen G, Dittmer J, Mouget J-L. 2014. Marennine, promising blue pigments from a widespread Haslea diatom species complex. Marine Drugs 12: 3161-3189.
  • Fraser DJ, Debes P, Bernatchez L, Hutchings JA. 2014. Population size, habitat fragmentation, and the nature of adaptive variation in a stream fish. Proceedings of the Royal Society of London B. 281: Article Number: 20140370.
  • Evans ML, Præbel K, Peruzzi S, Amundsen P-A, Bernatchez L. 2014. Phenotype-environment association of the oxygen transport system in trimorphic European whitefish ( Coregonus lavaretus ) populations. Evolution. 68: 2197–2210.
  • Dudognon T, Guderley H, Quere C, Soudant P, Racotta IS and Kraffe E. 2015. Laboratory conditioning modifies properties of gill mitochondria from the Pacific oyster Crassostrea gigas . Marine Biology 162:1033-1045
  • Dion-Côté A-M, Renaut S, Normandeau E, Bernatchez L. 2014. RNA-seq reveals transcriptomic shock involving transposable elements reactivation in hybrids of young lake whitefish species. Molecular Biology and Evolution. 31:1188–1199.
  • Di-Poï C, Lacasse J, Rogers S, Aubin-Horth N. 2014. Extensive behavioural divergence following colonisation of the freshwater environment in threespine sticklebacks. PLoS ONE 9(6): e98980
  • Deschamps M-H, Poirier Stewart N, Demanche A, Vandenberg G.W. 2014. Preliminary study for phenotypic description of vertebral abnormalities in triploid trout subjected to prolonged deficiency in phosphorus. J. Appl. Ichthyol. 30(4), 833-839.
  • Defo M, Bernatchez L, Campbell PCG, Couture P. 2014. Waterborne cadmium and nickel impact oxidative stress responses and retinoid metabolism in yellow perch. Aquatic Toxicology. 154: 207-220.
  • Dargent F , Scott ME, Hendry AP & Fussmann GF. 2014. Experimental evolution of parasite resistance in wild guppies: natural and multifarious selction. Invited reply. Proceedings of the Royal Society B 281, 20141820.
  • Dallaire-Dufresne S, Tanaka KH, Trudel MV, Lafaille A et Charette SJ. 2014. Virulence, genomic features, and plasticity of Aeromonas salmonicida subsp. salmonicida , the causative agent of fish furunculosis. Vet Microbiol 169:1-7.
  • Dallaire-Dufresne S, Emond-Rheault J-G, Attéré SA, Tanaka KH, Trudel MV, Frenette M et Charette SJ. 2014. Optimization of a plasmid electroporation protocol for Aeromonas salmonicida subsp. salmonicida. J. Microbiol. Methods, 98C:44-49.
  • Côté CL, Castonguay M, Svetlana McWilliam K, Cramb G, Bernatchez L. 2014. In absence of local adaptation, plasticity and spatially varying selection rule: a view from genomic reaction norms in a panmictic species ( Anguilla rostrata ). BMC Genomics. 15: 403.
  • Claveau-Mallet D, Courcelles B and Comeau Y. 2014. Phosphorus removal by steel slag filters modeling dissolution and precipitation kinetics to predict longevity. Environmental Science & Technology, 48(13): 7486-7493.
  • Byette F, Pellerin C and Marcotte I. 2014. Self-assembled pH-responsive films prepared from mussel anchoring threads , J. Mater. Chem. B 2, 6378 – 6386.
  • Boutin S, Sauvage C, Bernatchez L, Audet C and Derome N. 2014. Inter individual variations of the fish skin microbiota: host genetics basis of mutualism? PLos One 9: e102649. Doi:10.1371/journal.pone.0102649
  • Bourret V, Dionne M, Bernatchez L. 2014. Detecting genotypic changes associated with selective mortality at sea in Atlantic salmon: polygenic multilocus analysis surpasses genome scan. Molecular Ecology. 23: 4444-4457.
  • Boudreau LH, Duchez A-C, Cloutier N, Soulet D, Martin N, Bollinger J, Paré A, Rousseau M, Naika GS, Lévesque T, Laflamme C, Marcoux G, Lambeau G, Farndale RW, Pouliot M, Hamzeh-Cognasse H, Cognasse F, Garraud O, Nigrovic PA, Guderley H, Lacroix S, Thibault L, Semple JW, Gelb MH and Boilard E. 2014. Platelets realease mitochondria serving as substrate for bactericidal group IIA secreted phospholipase A2 to promote inflammation. Blood DOI 10.1182/blood-2014-05-573543
  • Blier PU, Lemieux H & Pichaud N. 2014. Holding our breath in our modern world: Will mitochondria keep the pace with climate changes?. Canadian Journal of Zoology, 92 (7), 591-601. doi:10.1139/cjz-2013-0183.
  • Bhat S, Amundsen P-A, Knudsen R, Gjelland, ØK, Fevolden S-E, Bernatchez L, Præbel K.. 2014. Speciation reversal in European whitefish ( Coregonus lavaretus (L.)) caused by competitor invasion. PlosOne. 9: e91208.
  • Bassim S, Tanguy A, Genard B, Moraga D, Tremblay R. 2014. Identification of Mytilus edulis genetic regulators during early development. Gene 551:65-78.
  • Bassim S, Genard B, Gauthier-Clerc S, Moraga D, Tremblay R. 2014. Ontogeny of mollusc immunity in the era of Next Generation Sequencing techniques. Reviews in Aquaculture 6: 1–21.
  • Barca C, Meyer D, Liira M, Drissen P, Comeau Y, Andrès, Y, Chazarenc F. 2014. Steel slag filters to upgrade phosphorus removal in small wastewater treatment plants: Removal mechanisms and performance. Ecological Engineering , 68: 214-222.
  • Azizishirazi A, Dew WA, Bougas B, Dashtban M, Bernatchez L, Pyle G. 2014. Chemosensory mediated behaviours and gene transcription profiles in wild yellow perch ( Perca flavescens ) from metal contaminated lakes. Ecotoxicology and Environmental Safety. 106: 239-245
  • Auffret M, Yergeau É, Pilote A, Proulx É, Proulx D, Greer CW, Vandenberg GW and Villemur R. 2014. Impact of water quality on the bacterial populations and off‐flavours in recirculating aquaculture systems. FEMS microbiology ecology, 84(2), 235-247.
  • Arnold AA., Genard B, Warschawski DE, Zito F, Tremblay R et Marcotte I. 2014. Identification of lipid and saccharide constituents of whole microalgal cells by 13 C solid-state NMR , Biochim. Biophys Acta 1848, 369-377.